Table 4.
Profiles of SNPs exceeding genome-wide significance and suggestive levels.
| Breed | Behavioral traits | Chr | rs | Position | Allele1 | Allele0 | Af | Beta | SE | P value | Adjusted P value |
|---|---|---|---|---|---|---|---|---|---|---|---|
| GSs | Interest in the target | 24 | chr24_33618334 | 3,36,18,334 | G | A | 0.112 | − 1.133 | 0.229 | 2.534 E−06 | 0.063 |
| 24 | BICF2G630498032 | 3,37,23,291 | A | G | 0.112 | − 1.133 | 0.229 | 2.534 E−06 | 0.063 | ||
| 24 | BICF2G630498018 | 3,37,33,724 | A | G | 0.112 | − 1.133 | 0.229 | 2.534 E−06 | 0.063 | ||
| 24 | BICF2G630497996 | 3,37,45,360 | A | C | 0.112 | − 1.133 | 0.229 | 2.534 E−06 | 0.063 | ||
| 24 | chr24_33809914 | 3,38,09,914 | A | G | 0.112 | − 1.133 | 0.229 | 2.534 E−06 | 0.063 | ||
| Qualification | 10 | BICF2G630481738 | 2,80,43,923 | A | G | 0.376 | 0.340 | 0.071 | 5.311 E−06 | 0.082 | |
| 10 | BICF2G630481751 | 2,80,57,172 | A | G | 0.376 | 0.340 | 0.071 | 5.311E−06 | 0.082 | ||
| 10 | BICF2G630481758 | 2,80,62,470 | A | C | 0.376 | 0.340 | 0.071 | 5.311 E−06 | 0.082 | ||
| 10 | BICF2G630481773 | 2,80,89,514 | A | G | 0.376 | 0.340 | 0.071 | 5.311 E−06 | 0.082 | ||
| 10 | BICF2G630481777 | 2,80,96,007 | A | T | 0.376 | 0.340 | 0.071 | 5.311 E−06 | 0.082 | ||
| 10 | chr10_28136562 | 2,81,36,562 | A | G | 0.376 | 0.3402 | 0.071 | 5.311 E−06 | 0.082 | ||
| 10 | BICF2G630481882 | 2,85,23,673 | A | G | 0.376 | 0.332 | 0.070 | 6.613 E−06 | 0.082 | ||
| 10 | chr10_28523951 | 2,85,23,951 | G | A | 0.376 | 0.332 | 0.070 | 6.613 E−06 | 0.082 | ||
| 10 | BICF2P1224117 | 3,20,42,504 | A | G | 0.36 | − 0.269 | 0.056 | 4.946 E−06 | 0.082 | ||
| 10 | BICF2P850545 | 3,20,60,963 | C | A | 0.36 | − 0.269 | 0.056 | 4.946 E−06 | 0.082 | ||
| LRs | Friendliness to humans | 15 | TIGRP2P198958_rs9132287 | 3,15,96,031 | A | G | 0.015 | − 1.463 | 0.285 | 6.647 E−07 | 0.034 |
| 15 | TIGRP2P199109_rs9018263 | 3,21,07,172 | A | G | 0.015 | − 1.463 | 0.285 | 6.647 E−07 | 0.034 | ||
| 15 | BICF2P472555 | 3,65,43,527 | T | A | 0.015 | − 1.463 | 0.285 | 6.647 E−07 | 0.034 | ||
| Qualification | 12 | BICF2P1089244 | 2,13,028 | G | A | 0.032 | 0.627 | 0.132 | 4.174 E−06 | 0.078 | |
| 12 | BICF2P1065219 | 2,37,954 | A | G | 0.032 | 0.627 | 0.132 | 4.174 E−06 | 0.078 | ||
| 12 | TIGRP2P155138_rs9160410 | 3,15,186 | C | A | 0.039 | 0.574 | 0.121 | 3.686 E−06 | 0.078 | ||
| 12 | BICF2P385657 | 4,07,914 | A | G | 0.032 | 0.627 | 0.132 | 4.174 E−06 | 0.078 | ||
| 12 | chr12_420732 | 4,20,732 | G | A | 0.039 | 0.574 | 0.121 | 3.686 E−06 | 0.078 | ||
| 12 | BICF2P843301 | 4,67,795 | A | G | 0.039 | 0.574 | 0.121 | 3.686 E−06 | 0.078 | ||
| 12 | BICF2S23760072 | 55,32,843 | G | A | 0.1 | 0.384 | 0.078 | 2.014 E−06 | 0.078 | ||
| 23 | BICF2G630371785 | 3,57,49,876 | G | A | 0.295 | − 0.254 | 0.052 | 1.942 E−06 | 0.078 | ||
| 23 | chr23_44491586 | 4,44,91,586 | G | C | 0.461 | − 0.215 | 0.046 | 4.609 E−06 | 0.078 |
GS, German Shepherd; LR, Labrador Retriever.