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. Author manuscript; available in PMC: 2024 May 3.
Published in final edited form as: Neuron. 2023 Mar 8;111(9):1486–1503.e7. doi: 10.1016/j.neuron.2023.02.012

KEY RESOURCES TABLE

REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies
Fluorescent Nissl Stain Invitrogen RRID: AB_2572212
RNAscope Mm-Slc17a6 ACDbio Cat# 319171-C2
RNAscope Mm-Slc32a1 ACDbio Cat# 319191-C3
Bacterial and Virus Strains
AAV1-CAG-FLEX-GFP-WPRE A gift from Hongkui Zeng94 Addgene plasmid # 51502
AAV1-EF1a-DIO-hChR2-eYFP A gift from Karl Deisseroth Addgene plasmid # 20298
AAV1-EF1a-DIO-eYFP A gift from Karl Deisseroth Addgene plasmid # 27056
AAV1-CAG-FLEX-ArchT-GFP A gift from Edward Boyden95 Addgene plasmid # 29777
pAAV-hSyn-hChR2 (H134R)-EYFP A gift from Karl Deisseroth Addgene plasmid # 26973
pAAV-TREtight-mTagBFP2-B19G A gift from Ian Wickersham60 Addgene plasmid # 100799
pAAV-Syn-FLEX-splitTVA-EGFP-tTA A gift from Ian Wickersham60 Addgene plasmid # 100798
RVΔG-4mCherry (EnVA) A gift from Ian Wickersham N/A
pAAV-Ef1a-DIO-eNpHR-3.0-EYFP A gift from Karl Deisseroth96 Addgene plasmid # 26966
AAV1-Syn-FLEX-GCamp6s-WPRE-SV40 A gift from Douglas Kim & GENIE Project97 Addgene plasmid # 100845
Chemicals, peptides, and recombinant proteins
Kwik-Cast Sealant WPI, Inc. KWIK-CAST
Paraformaldehyde Alfa Aesar OmniPur 10194340
NaCl OmniPur UI27FZEMS
KCl Mallinckrodt 7447-40-7
NaHCO3 EMD Chemicals 48204847
MgCl2 J.T. Baker 7791-18-6
CaCl2 EMD Chemicals 41046444
Glucose Sigma SLBC6575V
Sucrose Millipore D00168514
Agarose OmniPur 3332C511
DAPI ACDbio 323108
Dil Invitrogen D282
Muscimol,>98%; Tocris; 10mg Fisher Scientific 28910
Experimental models: Organisms/strains
Mouse: C57BL/6J The Jackson Laboratory RRID: IMSR_JAX:000664
Mouse: Ai14 The Jackson Laboratory RRID: IMSR_JAX:007914
Mouse: VGluT2-ires-Cre mice The Jackson Laboratory RRID: IMSR_JAX: 016963
Mouse: VGAT-ires-Cre mice The Jackson Laboratory RRID: IMSR_JAX: 016962
Software and Algorithms
Data acquisition with Labview LabVIEW http://www.ni.com/en-us/shop/labview.html: RRID: SCR_014325
Custom-written MATLAB code for analysis MATLAB http://www.mathworks.com/; RRID: SCR_001622
Allen Reference Atlas (Dong, 2008)98 http://www.brainmap.org/; RRID: RRID: SCR_008848
Offline sorter Plexon http://plexon.com/;RRID: RRID: SCR_000012
Prism GraphPad https://www.graphpad.com/scientific-software/prism/; RRID:SCR_002798
Custom-written python code for analysis Python https://www.python.org/; RRID:SCR_008394
OpenCV library OpenCV https: opencv.org/;RRID: SCR_015526
Fiji NIH https://fiji.sc/; RRID:SCR_002285
Original code for analysis of behavioral data https://doi.org/10.5281/zenodo.7604169 https://doi.org/10.5281/zenodo.7604169
Other
Free Field Speaker TDT MF1 N/A
Sound-Attenuation Booth Gretch-Ken Industries N/A
NI board for sound generation National Instrument PCl-6731
Microvalve Lee Co. LFAA1209512H
Optrode Neuronexus Technologies A1x16-Poly2-5mm-50 s-177-OA16LP