Table 1.
Information of detected methylated motifs and bases in different isolates
| Isolate | Motif IDa | Motif sequenceb | Number of methylated motifs | Total number of motifs | Proportion of methylated motifs (%) | Number of methylated basesc |
|---|---|---|---|---|---|---|
| IMAU10004 | motif_001 | CYYANNNNNNGTG/CACNNNNNNTRRG | 1636 | 1652 | 99.03 | 1937 |
| IMAU10510 | motif_002 | CGANNNNNNNTARC/GYTANNNNNNNTCG | 1046 | 1066 | 98.12 | 1585 |
| IMAU10557 | motif_003 | CTGCAG | 1460 | 1476 | 98.92 | 13,707 |
| motif_004 | GCATC/GATGC | 9178 | 9338 | 98.29 | ||
| motif_005 | GCANNNNNNNTTAC/GTAANNNNNNNTGC | 652 | 666 | 97.90 | ||
| IMAU11652 | motif_006 | CCATC/GATGG | 6292 | 8100 | 77.68 | 28,132 |
| motif_007 | CGGAT/ATCCG | 5996 | 6127 | 97.86 | ||
| motif_004 | GCATC/GATGC | 8911 | 8982 | 99.21 | ||
| motif_008 | TGGAG/CTCCA | 2428 | 2442 | 99.43 | ||
| motif_009 | CGANNNNNNNTAYG/CRTANNNNNNNTCG | 984 | 986 | 99.80 | ||
| IMAU60143 | motif_010 | GAGCC/GGCTC | 2795 | 2797 | 99.93 | 3452 |
| IMAU70001 | motif_011 | YAGGAG/CTCCTR | 956 | 1018 | 93.91 | 1559 |
| IMAU70038 | motif_012 | GCAAAG/CTTTGC | 2516 | 2516 | 100.00 | 4423 |
| motif_013 | GARANNNNNNGTG/CACNNNNNNTYTC | 1358 | 1358 | 100.00 | ||
| IMAU70046 | motif_014 | ACCNNNNNNGTC/GACNNNNNNGGT | 2251 | 2256 | 99.78 | 3444 |
| motif_015 | CRTANNNNNNCGT/ACGNNNNNNTAYG | 619 | 624 | 99.20 | ||
| IMAU70057 | motif_016 | CGANNNNNNNTTGY/RCAANNNNNNNTCG | 1999 | 2012 | 99.35 | 2430 |
| IMAU70061 | motif_017 | GCCAT/ATGGC | 11,353 | 11,419 | 99.42 | 12,368 |
| IMAU70083 | motif_018 | GYTANNNNNNNTTGY/RCAANNNNNNNTARC | 953 | 956 | 99.69 | 2716 |
| IMAU80010 | motif_019 | ACCNNNNNCCT/AGGNNNNNGGT | 1924 | 1966 | 97.86 | 10,074 |
| motif_014 | ACCNNNNNNRTC/GAYNNNNNNGGT | 6575 | 7382 | 89.07 | ||
| IMAU80044 | motif_020 | AAGGAG/CTCCTT | 1100 | 1142 | 96.32 | 3629 |
| motif_021 | CCANNNNNNNTYTC/GARANNNNNNNTGG | 1729 | 1750 | 98.80 | ||
| IMAU80047 | motif_020 | AAGGAG/CTCCTT | 1093 | 1110 | 98.47 | 4706 |
| motif_021 | CCANNNNNNNTYTC/GARANNNNNNNTGG | 1727 | 1730 | 99.83 | ||
| IMAU80077 | motif_022 | CCANNNNNNNTANNG/CNNTANNNNNNNTGG | 2716 | 2726 | 99.63 | 3096 |
| IMAU80079 | motif_022 | CCANNNNNNNTANNG/CNNTANNNNNNNTGG | 2693 | 2696 | 99.89 | 3535 |
| IMAU80116 | motif_001 | CYYANNNNNNGTG/CACNNNNNNTRRG | 1741 | 1808 | 96.29 | 2357 |
| PC646 | motif_023 | GCANNNNNNNTGC | 2216 | 2218 | 99.91 | 3746 |
| motif_024 | GACNNNNNRTAT/ATAYNNNNNGTC | 961 | 962 | 99.90 | ||
| PC804 | motif_025 | GCAAAT/ATTTGC | 2722 | 2825 | 96.35 | 3857 |
| Zhang | motif_026 | ACRCAG/CTGYGT | 1861 | 1908 | 97.54 | 2621 |
aEach motif ID represents one specific motif sequence.
bPalindromic motifs are presented in the format of “forward/reverse”.
cEight isolates (IMAU10043, IMAU10685, IMAU30101, IMAU70017, IMAU70018, PC724, IMAU70027, and IMAU80048) have no detected motifs, and their methylated bases ranged from 375 to 1312. Degenerate bases: N = A, C, G, T; R = A, G; Y = C, T.