Table 4:

Combination table of workflow execution and execution settings. The first column is the definition of the execution name. In the second column and below are the workflow execution settings. The blank cells in the third and fourth columns indicate that there are no differences in the execution settings.

Execution name	Workflow	Version	Dataset	Environment
GATK_1st	GATK			Linux
GATK_2nd				Linux
GATK_mac				Mac
JGA_1st	JGA			Linux
JGA_2nd				Linux
JGA_mac				Mac
RNA-seq_1st	RNA-seq	v3.7	Standard	Linux
RNA-seq_2nd		v3.7	Standard	Linux
RNA-seq_mac		v3.7	Standard	Mac
RNA-seq_v3.6		v3.6	Standard	Linux
RNA-seq_small		v3.7	Small	Linux