Table 3.
Heatmap profile showing the relative abundance the different norovirus genotype sequences detected in the 12 samples.
| ORF1 | ORF2 | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| GI.[P1] | GI.[P8] | GI.[P9] | GI.[P13] | GII.[P7] | GII.[P17] | GII.[P21] | GII.[P25] | GII.[P31] | GI.1 | GI.3 | GI.8 | GI.9 | GII.3 | GII.6 | GII.7 | GII.12 | GII.14 | GII.17 | |
| 2006-D | 0 | 0 | 0 | 0 | 230,961 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 215,421 | 0 | 0 | 0 | 0 |
| 2006-G | 0 | 0 | 1,257 | 1,104 | 19,173 | 0 | 315 | 0 | 0 | 0 | 3,046 | 0 | 351 | 778 | 13,198 | 1,332 | 1,098 | 4,246 | 0 |
| 2006-M* | 67 | 0 | 0 | 0 | 91,892 | 0 | 0 | 0 | 0 | 0 | 32 | 0 | 0 | 0 | 89,428 | 580 | 0 | 1 | 0 |
| 2006-G2* | 1,019 | 0 | 2,249 | 0 | 104,416 | 0 | 0 | 0 | 0 | 560 | 0 | 0 | 1,017 | 991 | 101,242 | 1,179 | 0 | 537 | 0 |
| 2007-P* | 0 | 0 | 0 | 0 | 3,020 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1,918 | 4 | 0 | 1,829 | 0 |
| 2009-P | 0 | 0 | 0 | 0 | 2,067 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 614 | 0 | 0 | 0 | 0 |
| 2012-K | 0 | 0 | 0 | 0 | 229 | 0 | 0 | 0 | 0 | 0 | 0 | 132 | 0 | 0 | 230 | 0 | 0 | 770 | 0 |
| 2014-K2 | 0 | 0 | 0 | 0 | 1,054 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 104 | 0 | 0 | 0 | 0 |
| 2014-K1 | 0 | 103 | 0 | 0 | 0 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 296 | 0 | 0 | 0 | 0 | 0 | 3 |
| 2014-K* | 0 | 0 | 0 | 0 | 50,292 | 325 | 0 | 2,805 | 311 | 0 | 0 | 0 | 0 | 0 | 34,240 | 0 | 0 | 0 | 2,361 |
| 2016-B | 1 | 0 | 1 | 0 | 573 | 1,482 | 0 | 2,262 | 0 | 0 | 0 | 0 | 1 | 0 | 597 | 2 | 0 | 16 | 1,823 |
| 2016-B2 | 16 | 0 | 0 | 0 | 199 | 166 | 0 | 18 | 0 | 0 | 182 | 0 | 1 | 1 | 46 | 4 | 0 | 0 | 67 |
The number of reads per million (rpm) showing a positive blast with the different genotypes identified is reported for each sample, for the two main ORF allowing the typing. The stars indicate samples in which a complete genome was identified. Green case: no rpm, yellow case < 20,000 rpm, red case: >20,000 rpm.