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. 2023 May 5;79(Pt 5):119–127. doi: 10.1107/S2053230X23003199

Table 4. PISA analysis of acarbose (ACR) structures (hydrogen bonds).

The distance cutoff for hydrogen bonds used here is 3.2 Å. For both structures chain A was used in the comparison (GtfC, PDB entry 3aib; GtfB, PDB entry 8fjc).

GtfC GtfB
Residue Atom ACR atom Distance (Å) Distance (Å) ACR atom Atom Residue
Arg475 NH2 O2A 3.05 3.05 O2A NH2 Arg449
Asp477 OD2 O6A 3.23 2.83 O6A OD2 Asp451
Asn481 ND2 O2B 2.50 3.02 O2B OD1 Asn455
Glu515 OE2 N4B 3.13 2.80 O3B OE1 Glu489
        2.39 O1D ND2 Asn511
Arg540 NH2 O1D 3.03 3.17 O6D NH2 Arg514
Arg540 NH1 O1D 3.01        
His587 NE2 O3A 2.28 2.83 O3A NE2 His561
        2.80 O2A NE2 His561
Asp588 OD2 N4B 3.19 3.09 N4B OD2 Asp562
        2.83 O2A OD2 Asp562
        2.67 O4A OD2 Asp883
        2.77 O6A NE2 Gln934