Table 3.
RING analysis showing non-covalent interactions between aptamers and BamA protein.
| Aptamer | Residue in BamA protein | Residue in aptamer | Type of interaction |
|---|---|---|---|
| Apt31 | VAL410 | T11 | VDW |
| VAL410 | A12 | VDW | |
| GLN414 | A19 | VDW | |
| LEU418 | A12 | VDW | |
| ASP475 | G16 | VDW | |
| ASP477 | G16 | VDW | |
| TYR478 | G16 | VDW | |
| TYR478 | G17 | VDW | |
| GLU480 | G17 | HBOND | |
| LYS642 | T18 | VDW | |
| TRP740 | T41 | VDW | |
| LEU768 | T11 | VDW | |
| PHE773 | T9 | VDW | |
| PHE773 | G10 | VDW | |
| LEU775 | C6 | VDW | |
| ASP783 | T41 | VDW | |
| PHE791 | G10 | VDW | |
| PHE793 | G10 | VDW | |
| Apt33 | SER405 | T5 | HBOND |
| GLN414 | T32 | HBOND | |
| PHE791 | T8 | VDW | |
| HTO008 | PHE412 | G4 | VDW |
| PHE412 | C5 | VDW | |
| PHE793 | G4 | VDW |