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. 2000 Jul;68(7):4117–4134. doi: 10.1128/iai.68.7.4117-4134.2000

TABLE 1.

Sequence identitiesa define five distinct gp15/45/60 allelic groups: Ia, Ib, Ic, Id, and II

Allelic group Isolate Identity (%)
Ia
Ib
Ic
Id
II
SFGH1 SFGH3 SFGH4 SFGH6 2066K 0541L 0542J 2064D CCPO2 NEMC1 9877 0676I SFGH23 CCPO1 NINC1 Brazil Iowa KSU1 NT009 Peru TAMU UCP Zaire
Ia SFGH1 100 99.1 99.1 99.1 99.0 70.5 69.7 70.5 71.6 71.8 71.8 74.5 70.9 70.3 72.3 73.2 77.0 77.0 77.0 77.0 77.0 76.9 73.5
SFGH3 99.7 100 100 99.4 99.4 71.2 70.6 71.2 72.4 72.6 72.6 74.1 70.0 74.1 76.1 76.1 76.0 76.0 76.0 76.0 76.0 76.0 75.8
SFGH4 99.7 100 100 99.4 99.4 71.2 70.6 71.2 72.4 72.6 72.6 74.1 70.0 74.1 76.1 76.1 76.0 76.0 76.0 76.0 76.0 76.0 75.8
SFGH6 99.7 99.8 99.8 100 99.4 71.4 70.6 71.5 71.0 71.2 71.2 74.4 70.4 72.4 72.5 76.7 77.4 77.4 77.4 77.4 77.4 76.9 76.9
2066K 99.7 99.8 99.8 99.8 100 73.4 72.9 73.4 73.6 73.4 73.4 74.1 70.2 72.3 71.2 75.4 75.5 75.5 75.5 75.5 75.5 75.5 75.5
Ib 0541L 78.2 77.8 77.8 78.5 79.7 100 100 99.7 98.1 98.4 98.4 76.4 79.1 70.2 68.3 69.4 74.4 74.4 74.4 74.4 74.4 74.3 69.7
0542J 78.2 77.4 77.4 78.0 79.5 100 100 99.7 98.4 98.4 98.4 75.7 78.8 69.6 67.3 68.8 73.6 73.6 73.6 73.6 73.6 73.6 68.9
2064D 78.2 77.7 77.7 78.4 79.6 99.9 99.9 100 97.8 98.1 98.1 76.4 79.0 69.9 68.3 69.5 74.4 74.4 74.4 74.4 74.4 74.4 69.8
CCPO2 77.7 77.0 77.0 77.8 79.8 98.7 99.2 98.7 100 99.7 99.7 75.7 79.0 70.4 69.3 69.3 74.0 74.0 74.0 74.0 74.0 73.9 69.6
NEMC1 78.1 77.4 77.4 78.2 79.9 99.2 99.3 99.2 99.6 100 100 75.8 79.1 70.6 69.6 69.5 74.3 74.3 74.3 74.3 74.3 74.1 69.8
9877 78.1 77.4 77.4 78.2 79.9 99.2 99.3 99.2 99.6 100 100 75.8 79.1 70.6 69.6 69.5 74.3 74.3 74.3 74.3 74.3 74.1 69.8
Ic 0676I 79.6 79.3 79.3 79.5 79.0 85.3 85.0 85.3 85.0 85.3 85.3 100 92.2 73.0 76.9 76.9 77.3 77.3 77.3 77.3 77.3 77.2 76.6
SFGH23 77.9 78.1 78.1 78.3 78.0 87.1 87.2 87.1 87.4 87.5 87.5 95.4 100 71.4 71.7 71.6 72.0 72.0 72.0 72.0 72.0 71.9 71.3
Id CCPO1 80.9 79.7 79.7 82.4 82.8 80.1 79.7 80.0 79.5 79.9 79.9 79.9 78.9 100 79.5 79.9 80.2 80.2 80.2 80.2 80.2 80.2 80.2
II NINC1 80.8 84.6 84.6 82.5 79.7 78.6 78.1 78.7 77.5 77.9 77.9 83.1 80.3 80.9 100 99.7 99.7 99.7 99.7 99.7 99.7 99.7 99.4
Brazil 81.6 84.8 84.8 81.6 81.2 80.0 79.6 80.0 79.5 79.9 79.9 82.9 80.0 83.5 99.8 100 100 100 100 100 100 100 99.7
Iowa 81.9 84.7 84.7 83.6 84.0 79.9 79.9 80.0 79.4 79.8 79.8 83.1 80.3 83.4 99.5 100 100 100 100 100 100 100 100
KSU1 81.9 84.7 84.7 83.6 84.0 79.9 79.9 80.0 79.4 79.8 79.8 83.1 80.3 83.4 99.5 100 100 100 100 100 100 100 100
NT009 81.9 84.7 84.7 83.6 84.0 79.9 79.9 80.0 79.4 79.8 79.8 83.1 80.3 83.4 99.5 100 100 100 100 100 100 100 100
Peru 81.9 84.7 84.7 83.6 84.0 79.9 79.9 80.0 79.4 79.8 79.8 83.1 80.3 83.4 99.5 100 100 100 100 100 100 100 100
TAMU 81.9 84.7 84.7 83.6 84.0 79.9 79.9 80.0 79.4 79.8 79.8 83.1 80.3 83.4 99.5 100 100 100 100 100 100 100 100
UCP 81.7 84.6 84.6 81.7 83.9 79.7 79.3 79.9 79.3 79.6 79.6 83.0 80.1 83.3 99.8 99.9 99.9 99.9 99.9 99.9 99.9 100 100
Zaire 81.8 84.7 84.7 81.8 81.2 80.2 79.6 80.2 79.7 80.0 80.0 83.1 80.3 84.4 99.7 99.9 100 100 100 100 100 99.9 100
a

Nucleotide (below diagonal) and amino acid (above diagonal). Intra-allelic sequence comparisons are in boldface.