TABLE 5.
Summary of ORFs within tsh region of pAPEC-1 and homologies to known sequencesa
| ORF or sequence | Positions (bp)b | Product length (aa) | Homology (% identity/ % similarity) | Region showing identity | Accession no.c (reference) |
|---|---|---|---|---|---|
| IS100 ORFA | 291>1213 | 340 | IS100 ORFA (100) | Full length | Z32853d (51) |
| IS100 ORFB | 1213>1971 | 252 | IS100 ORFB (99) | Full length | Z32853d (51) |
| IS30e | 2001<3161 | 386 | IS30 (100) | 2054<3161 | P37246 (13) |
| IS911 | 3118<3486 | 122 | IS911 (100) | Full length | CAA11505 (49) |
| ORF1 | 3582>4004 | 140 | Orf1 (99) | Full length | CAA11506 (49) |
| gp48 (86/96) | 3589>3795 | AAC19087 | |||
| IS801 Tnp (51/63) | 3793<3960 | P24607 (57) | |||
| tsh | 4127>8260 | 1,377 | Tsh (100) | Full length | L27423 (54) |
| Hbp (99) | Full length | CAA11507 (49) | |||
| ORF2 | 8369>8821 | 150 | PDF (99) | 8369>8761 | P27251 (46) |
| ORF3 | 8808<9065 | 85 | ParA resolvase (35/56) | 8829<9065 | P22996 (25) |
| ORF4 | 9245<10504 | 419 | L0015 (99) | Full length | AAC31494 (50) |
a
Only the most relevant homologies are presented.
b
Position on the 10,587-bp tsh region, with coding direction indicated as forward (>) or reverse (<) in relation to tsh.
c
GenBank accession number.
d
DNA sequence entry. Protein identity was derived from the predicted ORFs of the DNA sequence.
e
IS30 ORF interrupted by IS100 sequence.