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. 2023 Apr 3;20(5):714–722. doi: 10.1038/s41592-023-01830-1

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© The Author(s) 2023

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Extended Data Fig. 4 — (a) MS1 detection and MS2 analysis rates for prioritized precursors in the benchmark experiments displayed in Fig. 2a. Each boxplot contains 8 data points, one for each LC-MS/MS analysis. (b) MS1 detection and MS2 analysis rates for prioritized precursors in the benchmark experiments displayed in Fig. 2b–e. Each boxplot contains 8 data points, one for each LC-MS/MS analysis. In both panels, the statistics are shown for each tier along with the number of precursors in the tier. Boxplot whiskers display the minimum and maximum values within 1.5 times the interquartile range of the 25th and 75th percentiles, respectively; the 25th percentile, median, and 75th percentile are also featured.