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. 2023 May 10;617(7960):325–334. doi: 10.1038/s41586-023-05895-y

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© The Author(s) 2023

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.

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Extended Data Fig. 4 — Shown are the average number of SNVs per 10 kbp within SDs (red), unique (blue), and additional sequence classes (gray) across the HPRC haplotypes. These classes include exonic regions, ancient SDs (SD with <90% sequence identity) and all elements identified by RepeatMasker (RM) with Alu, L1 LINE, and HERV elements broken out separately. Below each sequence class we show the average number of SNVs per 10 kbp for the median haplotype. Standard deviations and measurements for additional repeat classes are provided in Table S3.