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. 2023 May 10;617(7960):312–324. doi: 10.1038/s41586-023-05896-x

Fig. 4. Pangenome graph evaluation.

Fig. 4

a,b, Precision and recall of autosomal small variants (a) and SVs (b) in the pangenomes relative to consensus variant sets. Small variants are compared to HiFi–DeepVariant calls. SVs are compared to the consensus of six reference-based SV callers (Methods). Comparisons are restricted to the Dipcall-confident regions and then stratified by the GIAB (v.3.0) genomic context. c, Average SV precision, recall and frequency in the Dipcall-confident regions stratified by length in the MC (top) and PGGB (bottom) graphs relative to consensus SV sets. The histogram bin size is 50 bp for SVs <1 kb and 500 bp for SVs ≥1 kb.