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. 2023 Apr 3;7(5):768–781. doi: 10.1038/s41559-023-02027-7

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© The Author(s) 2023

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 3 — a, Spearman’s rank correlation coefficient (ρ) within samples between SNB and features related to local dominance on the rank genus. The violin plots depict the distribution of ρ across all samples or those from the annotated biomes with the most samples. Annotated biomes are arranged according to mean α diversity. Positive values indicate that the feature is positively correlated with social generalists and negative values indicate that the feature is positively correlated with social specialists. Doubling time estimates are from the EGGO database. dig., digestive. b, ρ between SNB and genomic features in the PATRIC database on the rank genus within samples and within families. The violin plots depict the distribution of ρ across all samples and across all families with at least five genera. Genome sizes are given in base pairs (bp) and numbers of coding sequences (CDS). Genomic measures with annotations to the right are in numbers of unique functions for that specific functional universe. Genome size estimates for a genus are based on the genome size of its species, which is defined as the mean size of all strains for base pair and coding sequence measures, and as the majority set of functions of all strains for the functional universe measures. Pan-genome openness is the total pan-genome size divided by the mean genome size. Correlations with time to the last common ancestor (LCA) and first common ancestor (FCA) are based on the TimeTree database. Numbers to the right of violins show sample sizes. Lines within violin plots show the interquartile range and median. Supporting data are available in Supplementary Data 6 and 7. N., number; s.d., standard deviation.