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. 2023 May 10;617(7960):335–343. doi: 10.1038/s41586-023-05976-y

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© The Author(s) 2023

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.

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Extended Data Fig. 3 — We applied ODGI UNTANGLE to obtain a mapping from segments of all PVG paths onto T2T-CHM13. The segmentation cuts the graph into regular-sized regions whose boundaries occur at structural variant breakpoints. For each query subpath through a graph segment, we use a Jaccard metric over the sequence space of the subpaths to find the best-matching reference segment.