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. 2023 Apr 10;20(5):665–672. doi: 10.1038/s41592-023-01814-1

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© The Author(s) 2023

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Extended Data Fig. 10 — The datasets were clustered using walktrap clustering. Extended Data Fig. 5 shows the cells colored by cluster assignment for all datasets. (A) k-NN overlap of the two halves of the human neural progenitor dataset stratified by cluster. (B) k-NN overlap with the ground truth for the scDesign2 simulation stratified by cluster. (C) k-NN overlap with the deeply sequenced data for the siRNA knockdown dataset stratified by cluster.

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