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. 2023 Apr 10;20(5):665–672. doi: 10.1038/s41592-023-01814-1

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© The Author(s) 2023

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 3 — a, CPU time needed to calculate the transformation and identify the k-NNs for the 10x human helper T-cell dataset. The secondary axis shows the duration relative to the shifted logarithm. b, Dependence of run time on the number of cells, across datasets, shown on a double-logarithmic scale, with a linear fit. Most transformations have a slope of approximately 1 (scale linearly), whereas Sanity Distance and GLM PCA have a slope > 1.5, which indicates quadratic scaling. Source data are provided.

Source data