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. 2023 Apr 28;39(5):btad275. doi: 10.1093/bioinformatics/btad275

Figure 4.

Figure 4.

APOP finds allosteric pockets as top-ranked pockets in two homologous structures. (a and b) Human fructose-1,6-bisphosphatase structure (PDB ID: 3IFA) with a total 84 pockets in the assemblage. Here, APOP rank 2, 3, 4, and 5 pockets overlap with known allosteric pockets shown in yellow, rank 6 and 7 pockets are in green, and the rank 1 pocket is in blue. (c and d) S.scrofa fructose-1,6-bisphosphatase structure (PDB ID: 1KZ8) has a total of 69 pockets in its assemblage. APOP ranked 2, 3, 4, and 5 pockets overlap with known allosteric pockets reported in the structure and are shown in yellow, rank 6 and 7 pockets are shown in green, and rank 1 pocket in blue. The known allosteric ligands are in red.