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. 2022 Aug 31;8(4):225–238. doi: 10.52601/bpr.2022.220039

Table 1. Characteristics of Hoogsteen hydrogen bonds within hybrid G4s.

Model Hydrogen bonda Minimum Maximum Average
Ocpyb Distc Ocpy Dist Ocpy Dist

a The subscripted words of T, C, and B indicate the hydrogen bonds located in the top, central, and bottom G-tetrads of hybrid G4s, respectively

b Hydrogen bond occupancy during MD (%)
c Time averaged hydrogen bond length (Å)
Hybrid-I G4 O6∙∙∙H1−N1T 99.54 2.94 99.89 2.93 99.74 2.93
N7∙∙∙H21−N2T 99.23 2.97 99.82 3.02 99.60 2.99
O6∙∙∙H1−N1C 90.49 3.16 95.90 3.10 92.61 3.15
N7∙∙∙H21−N2C 98.76 3.00 99.86 2.94 99.42 2.98
O6∙∙∙H1−N1B 99.04 3.00 99.94 2.93 99.65 2.97
N7∙∙∙H21−N2B 99.64 2.97 99.92 2.96 99.78 2.97
Hybrid-I G4–APC1 O6∙∙∙H1−N1T 98.64 2.93 99.96 2.89 99.54 2.94
N7∙∙∙H21−N2T 99.15 3.00 99.92 2.96 99.69 2.98
O6∙∙∙H1−N1C 93.36 3.16 97.18 3.11 95.55 3.13
N7∙∙∙H21−N2C 99.35 2.99 99.93 2.96 99.75 2.97
O6∙∙∙H1−N1B 99.40 3.01 99.92 2.93 99.74 2.96
N7∙∙∙H21−N2B 99.04 3.03 99.94 2.94 99.64 2.98
Hybrid-I G4–APC2 O6∙∙∙H1−N1T 99.68 2.94 99.80 2.92 99.74 2.93
N7∙∙∙H21−N2T 99.01 2.99 99.92 2.99 99.43 3.00
O6∙∙∙H1−N1C 90.75 3.17 94.54 3.13 92.71 3.16
N7∙∙∙H21−N2C 99.21 2.98 99.77 2.96 99.60 2.98
O6∙∙∙H1−N1B 98.91 2.98 99.91 2.93 99.40 2.98
N7∙∙∙H21−N2B 99.70 2.97 99.91 2.96 99.77 2.96
Hybrid-II G4 O6∙∙∙H1−N1T 99.55 2.96 99.75 2.95 99.69 2.94
N7∙∙∙H21−N2T 98.63 3.06 99.87 2.97 99.41 2.99
O6∙∙∙H1−N1C 88.55 3.14 96.82 3.05 93.04 3.09
N7∙∙∙H21−N2C 98.16 3.02 99.75 2.97 99.33 2.98
O6∙∙∙H1−N1B 78.41 2.94 90.93 2.99 84.55 2.97
N7∙∙∙H21−N2B 78.48 3.00 99.54 2.98 89.00 2.99
Hybrid-II G4–APC1 O6∙∙∙H1−N1T 99.93 2.90 99.97 2.90 99.95 2.90
N7∙∙∙H21−N2T 96.05 3.01 99.79 3.02 98.77 3.01
O6∙∙∙H1−N1C 90.90 3.18 97.13 3.07 94.43 3.12
N7∙∙∙H21−N2C 99.48 2.98 99.83 2.97 99.68 2.98
O6∙∙∙H1−N1B 99.31 2.93 99.73 2.96 99.50 2.95
N7∙∙∙H21−N2B 99.38 2.96 99.71 2.99 99.54 2.98
Hybrid-II G4–APC2 O6∙∙∙H1−N1T 99.84 2.92 99.95 2.90 99.92 2.90
N7∙∙∙H21−N2T 91.75 3.05 99.83 2.97 97.66 3.01
O6∙∙∙H1−N1C 92.30 3.17 98.45 3.03 96.09 3.09
N7∙∙∙H21−N2C 98.28 3.01 99.82 2.96 99.38 2.98
O6∙∙∙H1−N1B 99.62 2.96 99.86 2.96 99.72 2.95
N7∙∙∙H21−N2B 99.27 2.99 99.90 2.97 99.50 2.98