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[Preprint]. 2023 Oct 26:2023.05.05.23289524. Originally published 2023 May 5. [Version 2] doi: 10.1101/2023.05.05.23289524

Figure 2:

Figure 2:

The data abstraction screen from the Cancer Patient Data Management System, augmented to support suggested data items as extracted from clinical text by DeepPhe-CR: (A) document-level topography, histology, behavior, laterality, and grade values are shown color-coded and labelled with appropriate ICD-O/NAACCR codes; (B) Suggested items and demographics can be copied to the in-progress abstract with a single click; (C) The clinical text is highlighted with color codes indicating text spans associated with the five summary values displayed in the suggestion area above (A). Thus, “Right breast cancer” is associated with topography C50.9, “breast” with histology 8500, and “right” with laterality 1.