Table 5.
RepeatMasker report of the content of repetitive elements in the new M. margaritifera genome assembly.
| Number of elements | Length occupies | Percentage of sequence | ||
|---|---|---|---|---|
| SINEs: | 99,204 | 18,473,640 bp | 0.75% | |
| ALUs | 0 | 0 bp | 0.00% | |
| MIRs | 48,204 | 8,371,356 bp | 0.34% | |
| LINEs: | 345,367 | 143,734,167 bp | 5.86% | |
| LINE1 | 12,130 | 3,357,131 bp | 0.14% | |
| LINE2 | 100,340 | 30,227,268 bp | 1.23% | |
| L3/CR1 | 8,437 | 3,557,603 bp | 0.14% | |
| LTR elements: | 211,377 | 145,957,516 bp | 5.95% | |
| ERVL | 6 | 360 bp | 0.00% | |
| ERVL-MaLRs | 0 | 0 bp | 0.00% | |
| ERV_classI | 19,402 | 1,295,486 bp | 0.05% | |
| ERV_classII | 5,672 | 1,603,072 bp | 0.07% | |
| DNA elements: | 1,603,010 | 421,567,495 bp | 17.18% | |
| hAT-Charlie | 32,085 | 3,719,809 bp | 0.15% | |
| TcMar-Tigger | 52,635 | 2,0922,832 bp | 0.85% | |
| Unclassified: | 2,158,454 | 668,949,483 bp | 27.26% | |
| Total interspersed repeats: | ||||
| Small RNA: | 52,314 | 10,622,911 bp | 0.43% | |
| Satellites: | 15,462 | 4,216,424 bp | 0.17% | |
| Simple repeats: | 40,358 | 10,377,834 bp | 0.42% | |
| Low complexity: | 149 | 24,863 bp | 0.00% |