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Tools for quality control of scRNA‐seq data.
| Tools | Function | Language | URL |
|---|---|---|---|
| Seurat | Analyse pipelines | R | https://github.com/satijalab/seurat |
| Scanpy | Analyse pipelines | Python | https://github.com/scverse/scanpy |
| Scater | Analyse pipelines | R | https://github.com/jimhester/scater |
| SoupX | Background contamination removal | R | https://github.com/constantAmateur/SoupX |
| DoubletFinder | Doublet removal | R | https://github.com/ddiez/DoubletFinder |
| Solo | Doublet removal | Python | https://github.com/calico/solo |
