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. 2023 May 17;6(5):e2313734. doi: 10.1001/jamanetworkopen.2023.13734

Table 2. Summary Information of Genetic Instruments for Modifiable Risk Factors.

Risk factor Unit SNVs, No.a LD thresholdb Variation, %
Low-density lipoprotein cholesterol SD in mmol/L 220 0.001 7.7c
Triglycerides SD in mmol/L 440 0.001 10.3c
Apolipoprotein B SD in g/L 255 0.001 9.2c
High-density lipoprotein cholesterol SD in mmol/L 534 0.001 11.9c
Apolipoprotein A1 SD in g/L 440 0.001 10.1c
Educational attainment years 3952 0.1 12-16
BMI SD per 1 unit 507 0.001 6
Smoking initiation Ever smoked regularly vs never smoke 378 0.1 2.3
Alcohol consumption SD in alcoholic drinks per week 99 0.1 0.7
Systolic blood pressure 10 mm Hg 266 0.1 5.7
Diastolic blood pressure 10 mm Hg 346 0.1 5.3
Type 2 diabetes Log odds 425 0.05 19

Abbreviations: BMI, body mass index (calculated as weight in kilograms divided by height in meters squared); LD, linkage disequilibrium; SNV, single nucleotide variant.

a

Number of independent SNVs at genome-wide significance level (P < 5 × 10−8).

b

LD refers to the degree to which an allele of 1 genetic variant is inherited or correlated with an allele of a nearby genetic variant within a given population. The threshold to prune for LD was obtained in the original genome-wide association studies.

c

Variation explained by genetic instrumental variables were calculated based on the formula: β2 × 2 × MAF × (1 − MAF), where MAF denotes mean minor allele frequency from European populations, obtained through Phenoscanner V2. Calculation of the remaining percentages are given in the original articles.