Table 2.
Open Biological and Biomedical Ontology Foundry ontologies used for input to OMOP2OBO mapping algorithm.
| Ontology | Classes | Labels | Synonyms | Cross-references |
|---|---|---|---|---|
| ChEBI | 126,169 | 126,169 | 269,798 | 231,247 |
| CL | 2238 | 2238 | 2124 | 1376 |
| HPO | 15,247 | 15,247 | 19,860 | 19,569 |
| Mondo | 22,288 | 22,288 | 98,181 | 159,918 |
| NCBITaxon | 2,241,110 | 2,241,110 | 263,571 | 18,426 |
| PRO | 215,624 | 215,624 | 590,190 | 195,671 |
| Uberon | 13,898 | 13,898 | 36,771 | 51,322 |
| VO | 5789 | 5789 | 6 | 0 |
ChEBI Chemical Entities of Biological Interest, CL Cell Ontology, HPO Human Phenotype Ontology, Mondo Mondo Disease Ontology, NCBITaxon National Center for Biotechnology Information Taxon Ontology, OMOP Observational Medical Outcomes Partnership, PRO Protein Ontology, Uberon Uber-Anatomy Ontology, VO Vaccine Ontology.