Table 5.
Phenotypic-genotypic correlation of antibiotic resistance in LAB isolates from human and Nigerian fermented food sources
| Isolates | Antibiotics Resistance Phenotype | Resistance genes detected by PCR |
|---|---|---|
| Lacticaseibacillus casei 3ST2 | CX, CMZ, CAZ; COT, K, FC, TOB; MET; MO, NX, NA, GAT; P, AMC; TEI, VA | aac(6’)-Ii, ermB, ermC, tetM, vanE, parC |
| Lacticaseibacillus casei 3ST5 | CD; CX, CMZ, CAZ; CIP, FC, GEN, K, PB, TOB, MET, MO, NX, NA, GAT, P, AMC, TEI, VA | aac(6’)-Ii, ermB, parC |
| Lacticaseibacillus casei 3ST7 | CD, CX, CMZ, CAZ, CIP, TR, FC, GEN, K, PB, TOB, MET, MO, NX, NA, GAT, P, AMC, TEI, VA | tetM |
| Lacticaseibacillus paracasei 3ST3 | CX, CMZ, CAZ, CIP, FC, GEN, K, PB, TOB, MET, NX, NA, GAT, TEI, VA | parC |
| Lactiplantibacillus pentosus 8ST5 | CD, CX, CMZ, CAZ, CIP, FC, GEN, K, PB, TOB, MRP, MET, MO, NX, NA, GAT, P, TEI, VA, TE | vanE, parC |
| Lactiplantibacillus plantarum 15ST2 | AZM, CD, CX, CMZ, CAZ, CIP, FC, GEN, K, PB, TOB, MET, MO, NX, NA, GAT, TEI, VA | parC |
| Lacticaseibacillus paracasei 3BM4 | CX, CMZ, CAZ, CIP, FC, GEN, K, PB, TOB, MET, MO, NX, NA, P, TEI, VA | aac(6’)-Ii, vanE, parC |
| Lactiplantibacillus plantarum 3BM1 | AZM, CD, CX, CMZ, CAZ, CIP, GEN, R, PB, TOB, MET, MO, NX, NA, GAT, P, TEI, VA, TE | ermB, ermC, vanE, parC |
| Lacticaseibacillus casei 8BM6 | CX, CMZ, CAZ, CIP, FC, GEN, K, PB, TOB, MET, MO, NX, NA, TEI, VA | aac(6’)-Ii, ermB, ermC, int-Tn(Tn916)-Tn1545, tetM, vanE, parC |
| Levilactobacillus brevis 8BM9 | AZM, CD, CX, CMZ, CAZ, CIP, GEN, K, PB, TOB, MET, NX, NA, GAT, TEI, VA | ermC, tetM, vanE, parC |
| Lacticaseibacillus casei GR4 | CX, CMZ, CAZ, CIP, FC, GEN, K, PB, TOB, MET, MO, NX, NA, P, TEI, VA | aac(6’)-Ii, vanE, parC |
| Levilactobacillus brevis GR2 | AZM, CD, CX, CMZ, CAZ, CIP, FC, K, PB, TOB, MET, MO, NX, NA, P, TEI, VA | aac(6’)-Ii, ermB, ermC, aph3IIIa, parC |
| Levilactobacillus brevis GR5 | CX, CMZ, CAZ, CIP, FC, K, PB, TOB, MET, MO, NX, NA, GAT, P, TEI, VA | parC |
| Lacticaseibacillus paracasei GR11 | AZM, CD, CX, CMZ, CAZ, CIP, COT, GEN, K, PB, TOB, MRP, MET, NX, NA, GAT, TEI, VA, TE | tetM, vanE, parC |
| Levilactobacillus brevis GR29 | CD, CX, CMZ, CAZ, CIP, FC, K, PB, TOB, MET, MO, NX, NA, GAT, TEI, VA | vanE, parC |
| Lacticaseibacillus casei GR27 | CD, CX, CMZ, CAZ, FC, K, TOB, MET, MO, NX, NA, TEI, VA | aac(6’)-Ii, vanE, parC |
| Lacticaseibacillus casei GR32 | CD, CX, CMZ, CAZ, FC, GEN, K, PB, TOB, MET, MO, NX, NA, GAT, P, AMC, TEI, VA | aac(6’)-Ii, ermB, ermC, parC |
| Lacticaseibacillus paracasei GR12 | CX, CMZ, CAZ, CIP, GEN, K, PB, TOB, MO, NX, NA, GAT, AMC, TEI, VA | aac(6’)-Ii, tetM, vanE, parC |
| Levilactobacillus brevis GR13 | AZM, CX, CMZ, CAZ, CIP, FC, GEN, K, PB, TOB, MET, MO, NX, NA, GAT, TEI, VA | parC |
| Lacticaseibacillus casei KN3 | CD, CX, CMZ, CAZ, CIP, TR, GEN, K, PB, TOB, MET, MO, NX, NA, GAT, TEI, VA, TE | vanE |
| Levilactobacillus brevis KN9 | AZM, CX, CMZ, CAZ, CIP, COT, TR, GEN, K, TOB, MRP, MET, MO, NX, NA, GAT, TEI, VA, TE | vanE |
| Lacticaseibacillus casei KN6 | CD, CX, CMZ, CAZ, FC, GEN, K, PB, TOB, MET, MO, NX, NA, P, TEI, VA | aac(6’)-Ii, ermB, ermC, parC |
| Lacticaseibacillus paracasei BK4 | CD, CX, CMZ, CAZ, FC, GEN, K, PB, TOB, MET, MO, NX, NA, TEI, VA | aac(6’)-Ii, ermC, tetM, vanE, parC |
| Levilactobacillus brevis BK8 | CD, CX, CMZ, CAZ, CIP, FC, GEN, K, PB, TOB, MET, MO, NX, NA, GAT, AMC, TEI, VA | aac(6’)-Ii, vanE |
| Lacticaseibacillus paracasei PT1 | CX, CMZ, CAZ, CIP, FC, GEN, K, PB, TOB, MET, MO, NX, NA, GAT, P, TEI, VA | aac(6’)-Ii, ermC, vanE |
| Lacticaseibacillus casei AK1 | CD, CX, CMZ, CAZ, CIP, FC, GEN, K, PB, TOB, MRP, MET, MO, NX, NA, GAT, P, AMC, TEI, VA, TE | vanE, parC |
| Lacticaseibacillus casei AK5 | CX, CMZ, CAZ, CIP, FC, GEN, K, PB, TOB, MRP, MET, MO, NX, NA, GAT, P, AMC, TEI, VA | aac(6’)-Ii, tetM, vanE, parC |
| Lacticaseibacillus paracasei NON4 | CD, CX, CMZ, CAZ, CIP, FC, K, PB, TOB, MET, MO, NX, NA, GAT, P, AMC, TEI, VA | ermB, parC |