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[Preprint]. 2023 May 12:2023.05.11.540291. [Version 1] doi: 10.1101/2023.05.11.540291

Table 1. Estimates for the amount of excess nuclear TDP-43 that is required to induce exon skipping across different experimental conditions.

Our results suggest that an increase in TDP-43 that is greater than 1.1 to 1.5 fold over normal protein levels may lead to exon skipping toxicity. Models for TDP-43 overexpression should avoid increasing nuclear TDP-43 and aim to strictly limit excess TDP-43 to only the cytoplasm.

Excess TDP-43 required to induce exon skipping
Fold change increase nuclear TDP-43 over baseline endogenous Exon skipping
1.1–1.5x Miminum exon skipping
1.5–2x 50–100% exon skipping
>2x Maximal exon skipping
Estimated diffusion of TDP-43NLSm (△NLS TDP-43) into the nucleus
Experimental condition Percentage of total TDP-43NLSm
Immunoblot of FACS isolated nuclei from transfected cells 10–45%
Immunoblot of inducible iGFP-WT and iGFP-NLSm cells 45%
Fold change of GFP fluorescence intensity by FACS 2–5%*
*

GFP is indirect measurement and may not accurately estimate the amount of nuclear △NLS-TDP-43