Table 1. Estimates for the amount of excess nuclear TDP-43 that is required to induce exon skipping across different experimental conditions.
Our results suggest that an increase in TDP-43 that is greater than 1.1 to 1.5 fold over normal protein levels may lead to exon skipping toxicity. Models for TDP-43 overexpression should avoid increasing nuclear TDP-43 and aim to strictly limit excess TDP-43 to only the cytoplasm.
Excess TDP-43 required to induce exon skipping | |
---|---|
Fold change increase nuclear TDP-43 over baseline endogenous | Exon skipping |
1.1–1.5x | Miminum exon skipping |
1.5–2x | 50–100% exon skipping |
>2x | Maximal exon skipping |
Estimated diffusion of TDP-43NLSm (△NLS TDP-43) into the nucleus | |
Experimental condition | Percentage of total TDP-43NLSm |
Immunoblot of FACS isolated nuclei from transfected cells | 10–45% |
Immunoblot of inducible iGFP-WT and iGFP-NLSm cells | 45% |
Fold change of GFP fluorescence intensity by FACS | 2–5%* |
GFP is indirect measurement and may not accurately estimate the amount of nuclear △NLS-TDP-43