Table 1.
Summary of mutation types observed in F. johnsoniae from the (co)evolution experiment. Mutations are from five representative clonal isolates after the final (fifth) plate passage and the ancestor
|
F. johnsoniae isolate |
Total |
Insertion |
Deletion |
Nonsynonymous |
Synonymous |
Nonsense |
|---|---|---|---|---|---|---|
|
Coevolved rep 1 |
6 |
2 |
1 |
3 |
0 |
0 |
|
Coevolved rep 2 |
5 |
0 |
2 |
3 |
0 |
0 |
|
Coevolved rep 3 |
6 |
0 |
0 |
5 |
1 |
0 |
|
Coevolved rep 4 |
5 |
1 |
1 |
3 |
0 |
0 |
|
Coevolved rep 5 |
5 |
1 |
2 |
2 |
0 |
0 |
|
Evolved monoculture rep 1 |
6 |
1 |
3 |
2 |
0 |
0 |
|
Evolved monoculture rep 2 |
7 |
1 |
3 |
2 |
0 |
1 |
|
Evolved monoculture rep 3 |
6 |
0 |
4 |
2 |
0 |
0 |
|
Evolved monoculture rep 4 |
6 |
2 |
1 |
3 |
0 |
0 |
|
Evolved monoculture rep 5 |
3 |
0 |
2 |
0 |
0 |
1 |
|
Ancestor* |
2 |
0 |
1 |
1 |
0 |
0 |
*Ancestor mutations that were also observed in evolved line(s) were not included in the tally of evolved line mutations.