Table 2.
Model name | Full name | Edges | Substitution model | Number of parameters |
---|---|---|---|---|
GTR+GTR | ||||
P-LEL | 2-block Linked Edge Lengths | |||
partition model | linked | unlinked | 30 | |
P-UEL | 2-block Unlinked Edge Lengths | |||
partition model | unlinked | unlinked | 42 | |
M-UGP | 2-class Unlinked GTR Parameters | |||
GHOST mixture model | unlinked | unlinked | 43 | |
M-LGP | 2-class Linked GTR Parameters | |||
GHOST mixture model | unlinked | linked | 35 |
The last column shows the number of parameters needed to estimate the model. The partitioning scheme used for both partition models was the same: the first 1000 sites as a block and the second 1000 sites as another block.