Table 1. Comparison of genomic features of 12X.v0, 12X.v2, PN40024.v4, and PN_T2T assemblies.
| 12X.v0 | 12X.v2 | PN40024.v4 | PN_T2T | |
|---|---|---|---|---|
| Total sequence length (bp) | 426 176 009 | 458 815 822 | 462 158 227 | 494 873 210 |
| Number of chromosomes | 19 | 19 | 19 | 19 |
| Contig N50 (bp) | 102 700 | 102 674 | 25 934 928 | |
| Maximum length (bp) | 30 274 277 | 34 568 450 | 34 942 157 | 36 684 271 |
| Number of gaps | 9429 | 5106 | 3391 | 0 |
| Centromeres annotated | 19/ 19 | |||
| Telomeres annotated | 36/38 | |||
| Bases masked (bp) | 303 719 475 | 328 929 883 | ||
| Retroelements (bp) | 217 819 122 | 241 027 616 | ||
| LTR (bp) | 212 117 752 | 235 245 099 | ||
| Number of genes | 28 516 | 41 182 | 35 256 | 37 534 |
| Number of TEs | 942 096 | 935 783 | ||
| BUSCO (%) | 93.70 | 97.70 | 98.20 | 98.50 |
12X.v0, https://www.ncbi.nlm.nih.gov/data-hub/genome/GCF_000003745.3.nih.gov. 12X.v2, https://urgi.versailles.inra.fr/files/Vini/Vitis%2012X.2%20annotations/12Xv2_grapevine_genome_assembly.fa.zip. PN40024.v4, https://grapedia.org/genomes/https://integrape.eu/resources/genes-genomes/genome-accessions.