Table 3.
Docking data for compounds 1- 3 against 3C protease of coxsackievirus B4 and using (PDB ID: 5iyt) as template crystal
| Ligand | Receptor | Interaction | Distance | E (kcal/mol) | Scoring |
|---|---|---|---|---|---|
| Co-crystal (NZN) | –10.0 | ||||
| S 30 | CG1 VAL 210 (A) | H-acceptor | 4.26 | −0.2 | |
| S 30 | CG2 VAL 210 (A) | H-acceptor | 4.12 | –0.2 | |
| S 30 | OH TYR 327 (A) | H-acceptor | 3.18 | –2.6 | |
| C 4 | 6-ring TYR 327 (A) | H-pi | 4.79 | –0.2 | |
| 6-ring | CE1 HIS 199 (A) | pi-H | 3.54 | –0.5 | |
| 6-ring | CE1 HIS 199 (A) | pi-H | 4.56 | –0.5 | |
| 6-ring | NE2 HIS 199 (A) | pi-H | 3.29 | –0.3 | |
| 6-ring | CG1 VAL 210 (A) | pi-H | 4.46 | –0.7 | |
| Comp. 1 | –8.1 | ||||
| N 9 | SG CYS 147 (A) | H-donor | 3.22 | –3.9 | |
| 6-ring | CA ALA 144 (A) | pi-H | 3.47 | –0.3 | |
| 6-ring | N GLY 145 (A) | pi-H | 4.04 | –0.8 | |
| Comp. 2 | –8.4 | ||||
| N 12 | SG CYS 147 (A) | H-donor | 3.19 | –3.6 | |
| S 30 | CB THR 142 (A) | H-acceptor | 4.48 | –0.4 | |
| 6-ring | CA ALA 144 (A) | pi-H | 3.44 | –0.3 | |
| 6-ring | N GLY 145 (A) | pi-H | 4.02 | –0.7 | |
| Comp. 3 | –9.6 | ||||
| C17 23 | OG1 THR 142 (A) | H-donor | 3.01 | –1.1 | |
| O28 1 | N GLY 145 (A) | H-acceptor | 2.75 | –2.9 | |
| O28 1 | N GLN 146 (A) | H-acceptor | 3.04 | –1.7 | |
| O28 1 | N CYS 147 (A) | H-acceptor | 3.21 | –0.6 | |