Table 4.
Docking data for compounds 1–3, and IFS, against (RNA-dependent RNA polymerase of coxsackievirus B4) ( template (PDB ID: 4y2a)
Ligand | Receptor | Interaction | Distance | E (kcal/mol) | Scoring |
---|---|---|---|---|---|
Co-crystal (IFS) | – 8.3 | ||||
S 30 | CG1 VAL 210 (A) | H-acceptor | 4.26 | – 0.2 | |
S 30 | CG2 VAL 210 (A) | H-acceptor | 4.12 | – 0.2 | |
S 30 | OH TYR 327 (A) | H-acceptor | 3.18 | – 2.6 | |
C 4 | 6-ring TYR 327 (A) | H-pi | 4.79 | – 0.2 | |
6-ring | CE1 HIS 199 (A) | pi-H | 3.54 | – 0.5 | |
6-ring | CE1 HIS 199 (A) | pi-H | 4.56 | – 0.5 | |
6-ring | NE2 HIS 199 (A) | pi-H | 3.29 | – 0.3 | |
6-ring | CG1 VAL 210 (A) | pi-H | 4.46 | – 0.7 | |
Comp. 1 | – 6.3 | ||||
S 27 | CG1 VAL 210 (A) | H-acceptor | 4.05 | – 0.2 | |
S 27 | CG2 VAL 210 (A) | H-acceptor | 4.09 | – 0.2 | |
S 27 | OH TYR 327 (A) | H-acceptor | 3.27 | – 2.4 | |
6-ring | CE1 HIS 199 (A) | pi-H | 3.5 | – 0.3 | |
6-ring | CE1 HIS 199 (A) | pi-H | 4.47 | – 0.4 | |
6-ring | NE2 HIS 199 (A) | pi-H | 3.36 | – 1 | |
6-ring | CG1 VAL 210 (A) | pi-H | 4.42 | – 0.6 | |
Comp. 2 | –6.5 | ||||
S 30 | NZ LYS 127 (A) | H-acceptor | 3.6 | – 8.4 | |
S 30 | OG SER 184 (A) | H-acceptor | 3.25 | – 0.9 | |
6-ring | CA SER 292 (A) | pi-H | 4.04 | – 0.8 | |
6-ring | CA SER 292 (A) | pi-H | 4.36 | – 0.8 | |
6-ring | N GLY 293 (A) | pi-H | 3.7 | – 0.6 | |
6-ring | CA GLY 293 (A) | pi-H | 3.74 | – 0.6 | |
Comp. 3 | – 6.9 | ||||
O 1 | CB SER 295 (A) | H-acceptor | 3.36 | – 0.5 | |
S 37 | CG1 VAL 210 (A) | H-acceptor | 4.14 | – 0.2 | |
S 37 | OH TYR 327 (A) | H-acceptor | 4.09 | – 1.3 | |
6-ring | CG2 VAL 210 (A) | pi-H | 3.42 | – 0.3 |