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. 2023 May 21:1–17. Online ahead of print. doi: 10.1007/s43440-023-00495-z

Table 4.

Docking data for compounds 13, and IFS, against (RNA-dependent RNA polymerase of coxsackievirus B4) ( template (PDB ID: 4y2a)

Ligand Receptor Interaction Distance E (kcal/mol) Scoring
Co-crystal (IFS) 8.3
S 30 CG1 VAL 210 (A) H-acceptor 4.26 – 0.2
S 30 CG2 VAL 210 (A) H-acceptor 4.12 – 0.2
S 30 OH TYR 327 (A) H-acceptor 3.18 – 2.6
C 4 6-ring TYR 327 (A) H-pi 4.79 – 0.2
6-ring CE1 HIS 199 (A) pi-H 3.54 – 0.5
6-ring CE1 HIS 199 (A) pi-H 4.56 – 0.5
6-ring NE2 HIS 199 (A) pi-H 3.29 – 0.3
6-ring CG1 VAL 210 (A) pi-H 4.46 – 0.7
Comp. 1 6.3
S 27 CG1 VAL 210 (A) H-acceptor 4.05 – 0.2
S 27 CG2 VAL 210 (A) H-acceptor 4.09 – 0.2
S 27 OH TYR 327 (A) H-acceptor 3.27 – 2.4
6-ring CE1 HIS 199 (A) pi-H 3.5 – 0.3
6-ring CE1 HIS 199 (A) pi-H 4.47 – 0.4
6-ring NE2 HIS 199 (A) pi-H 3.36 – 1
6-ring CG1 VAL 210 (A) pi-H 4.42 – 0.6
Comp. 2 6.5
S 30 NZ LYS 127 (A) H-acceptor 3.6 – 8.4
S 30 OG SER 184 (A) H-acceptor 3.25 – 0.9
6-ring CA SER 292 (A) pi-H 4.04 – 0.8
6-ring CA SER 292 (A) pi-H 4.36 – 0.8
6-ring N GLY 293 (A) pi-H 3.7 – 0.6
6-ring CA GLY 293 (A) pi-H 3.74 – 0.6
Comp. 3 6.9
O 1 CB SER 295 (A) H-acceptor 3.36 – 0.5
S 37 CG1 VAL 210 (A) H-acceptor 4.14 – 0.2
S 37 OH TYR 327 (A) H-acceptor 4.09 – 1.3
6-ring CG2 VAL 210 (A) pi-H 3.42 – 0.3