Table 5.
Docking data for compounds 1–3 against the capsid protein of coxsackievirus B4; protein receptor (PDB ID: 6ZCK)
Ligand | Receptor | Interaction | Distance | E (kcal/mol) | scoring |
---|---|---|---|---|---|
Co-crystal (QFW) | –10.78 | ||||
O4 26 | NH2 ARG 228 (A) | H-acceptor | 3.17 | –4.7 | |
O5 27 | NE ARG 228 (A) | H-acceptor | 3.16 | –4.6 | |
O4 26 | NE ARG 228 (A) | Ionic | 3.57 | –2.9 | |
O4 26 | NH2 ARG 228 (A) | Ionic | 3.17 | –5 | |
O5 27 | NE ARG 228 (A) | Ionic | 3.16 | –5.1 | |
C16 19 | 6-ring PHE 236 (B) | H-pi | 3.94 | –0.9 | |
6-ring | CE2 TYR 67 (A) | pi-H | 4.12 | –0.5 | |
6-ring | CA THR 235 (B) | pi-H | 3.87 | –0.5 | |
Comp. 1 | –7.93 | ||||
N 9 | OE1 GLN 233 (B) | H-donor | 3.11 | –3.2 | |
S 27 | CB VAL 91 (A) | H-acceptor | 3.84 | –0.4 | |
S 27 | N GLN 93 (A) | H-acceptor | 4.1 | –2.5 | |
S 27 | CB GLN 93 (A) | H-acceptor | 3.77 | –0.7 | |
6-ring | CB CYS 64 (A) | pi-H | 4.86 | –0.7 | |
6-ring | OH TYR 67 (A) | pi-H | 4.01 | –0.3 | |
Comp. 2 | –7.96 | ||||
C 16 | OE1 GLN 233 (B) | H-donor | 3.49 | –0.2 | |
S 30 | N CYS 64 (A) | H-acceptor | 4.68 | –0.8 | |
S 30 | OH TYR 230 (A) | H-acceptor | 4.61 | –0.6 | |
6-ring | CE2 TYR 67 (A) | pi-H | 4.72 | –0.2 | |
Comp. 3 | |||||
S 37 | CE2 TYR 67 (A) | H-acceptor | 3.77 | –0.3 | –9.53 |
S 37 | NH2 ARG 228 (A) | H-acceptor | 4.65 | –1.4 | |
C 4 | 6-ring PHE 236 (B) | H-pi | 4.39 | –0.6 | |
6-ring | N CYS 64 (A) | pi-H | 3.64 | –0.3 | |
6-ring | CB CYS 64 (A) | pi-H | 3.72 | –0.4 |