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. 2023 Jun 1;32(6):e4651. doi: 10.1002/pro.4651

TABLE 4.

Hydrogen bonds for GlcNol6P and GlcNAc6P with the allosteric site of SdNagBII.

GlcNol6P in chain A GlcNol6P in chain B
GlcNol6P atom Residue Atom name Chain Distance (Å) GlcNol6P atom Residue Atom name Chain Distance (Å)
O1P Tyr61 OH B 2.933 O1 Lys219 B 3.030
O1P Ser77 A 2.582 O4 Tyr215 OH A 2.929
O2P Arg49 NH2 A 2.709 O1P Tyr61 OH A 2.708
O2P Ser77 A 3.041 O1P Ser77 B 2.537
O2P Arg211 NH2 B 3.168 O2P Arg49 NH2 B 2.780
O3P Ser237 B 2.836 O2P Ser77 B 2.921
O2P Arg211 NH1 A 2.822
O2P Arg211 NH2 A 3.057
GlcNAc6P in chain A GlcNAc6P in chain B
GlcNAc6P atom Residue Atom name Chain Distance (Å) GlcNAc6P atom Residue Atom name Chain Distance (Å)
N2 Asp53 N2 A 3.017 N2 Asp53 O δ1 B 3.349
O6 Arg49 NH1 A 3.049 O6 Arg49 NH1 B 3.065
O1P Tyr61 OH B 2.753 O1P Tyr61 OH A 2.645
O1P Ser77 A 2.698 O1P Ser77 B 2.754
O2P Arg49 NH2 A 2.889 O2P Arg49 NH2 B 2.768
O2P Ser77 A 2.482 O2P Ser77 B 2.728
O2P Arg211 NH2 B 3.346 O2P Arg211 NH2 A 2.912
O3P Arg211 B 2.802 O3P Arg211 A 2.789
O3P Ser237 B 2.676 O3P Ser237 A 2.699