Table 3.
Alleles of acrA, acrB, acrE, acrF and tolC across the pangenomes of 18 E. coli ST
Allele conservation for five resistance-nodulation-division (RND) genes across 18 sequence types (ST) of E. coli . Here, allele refers to a group of sequences with ≥95 % sequence identity to one another. ST11 had no acrF allele.
|
Resistance-nodulation-division gene |
|||||||
|---|---|---|---|---|---|---|---|
|
Phylogroup |
n |
Lineage |
acrA |
acrB |
acrE |
acrF |
tolC |
|
A |
2370 |
ST10 |
1 |
1 |
2 |
5 |
2 |
|
B1 |
40 |
ST3 |
1 |
1 |
1 |
1 |
1 |
|
B1 |
1884 |
ST17 |
1 |
1 |
1 |
2 |
1 |
|
B1 |
2441 |
ST21 |
1 |
1 |
2 |
1 |
1 |
|
B2 |
283 |
ST12 |
1 |
2 |
2 |
4 |
1 |
|
B2 |
62 |
ST14 |
1 |
1 |
1 |
2 |
1 |
|
B2 |
46 |
ST28 |
1 |
1 |
1 |
1 |
1 |
|
B2 |
873 |
ST73 |
2 |
2 |
1 |
1 |
1 |
|
B2 |
758 |
ST95 |
2 |
1 |
1 |
1 |
1 |
|
B2 |
232 |
ST127 |
2 |
1 |
1 |
1 |
1 |
|
B2 |
3186 |
ST131 |
1 |
2 |
2 |
2 |
1 |
|
B2 |
91 |
ST141 |
1 |
1 |
1 |
1 |
1 |
|
B2 |
65 |
ST144 |
1 |
1 |
1 |
2 |
1 |
|
B2 |
54 |
ST372 |
1 |
1 |
1 |
1 |
1 |
|
D |
696 |
ST69 |
1 |
1 |
2 |
2 |
1 |
|
E |
5137 |
ST11 |
2 |
2 |
1 |
0 |
1 |
|
F |
269 |
ST117 |
1 |
1 |
1 |
2 |
2 |
|
F |
382 |
ST648 |
1 |
1 |
1 |
2 |
1 |
|
Total |
18 869 |
Mean number of alleles |
1.2 |
1.2 |
1.3 |
1.7 |
1.1 |