Table 3.
Summary of Protein–ligand interactions estimated from MD computations.
| Target | PDB | Ligand | Orientation | Average no. of ligand H-bonds | ∆EVdW | ∆EELEC | |
|---|---|---|---|---|---|---|---|
| As donor | As acceptor | (kcal·mol−1) | |||||
| hNNMT | 6b1a | CC-410 | A1 | 2.5 ± 0.9 | 0.8 ± 0.8 | − 30.1 ± 3.8 | + 2.8 ± 12.7 |
| mNNMT | 5yji | CC-410 | B2 | 1.2 ± 0.8 | 1.92 ± 0.8 | − 30.8 ± 3.4 | − 15.0 ± 11.2 |
| 5yji | CC-410 | A1 | 1.8 ± 0.8 | 0.44 ± 0.6* | − 32.3 ± 3.3 | − 1.5 ± 11.0 | |
| 5yji | SAH | N.A | 4.6 ± 0.9 | 5.2 ± 1.2 | − 16.7 ± 4.5 | + 2.7 ± 14.9 | |
Error values correspond to standard deviations. *All the H-bond data show skewed distributions. No negative values are neither recorded nor expected. N.A. stands for not applicable.