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. 2023 May 22;6:549. doi: 10.1038/s42003-023-04935-7

Table 1.

Overview of Cryo-EM data collection and coordinate refinement.

Apo hMRP4 PGE1-bound hMRP4 ATP-bound hMRP4 Sulindac-bound hMRP4
Data collection and processing
  Magnification 105,000× 105,000× 105,000× 96,000×
  Voltage (kV) 300 300 300 300
  Camera Gatan K3 Summit Gatan K3 Summit Gatan K3 Summit Falcon4
  Camera mode Super-resolution Super-resolution Super-resolution Super-resolution
  Electron exposure (e2) 50 50 50 50
  Defocus range (μm) 0.8–1.2 0.8–1.2 0.8–1.2 0.8–1.2
  Pixel size (Å) 0.856 0.855 0.855 0.86
  Symmetry imposed C1 C1 C1 C1
  Initial particle projections (no.) 1,854,905 2,147,528 389,704 371,999
  Final particle projections (no.) 203, 347 378, 698 108,200 151,694
  Map resolution (Å) 3.13 2.95 3.48 3.77
  FSC threshold 0.143 0.143 0.143 0.143
  Map resolution range (Å) 2.7–10 2.5– 8.5 2.3–9.7 1.95–9.45
Refinement
  Initial model used Not applicable (N/A) Not applicable (N/A) Not applicable (N/A) Not applicable (N/A)
  Model resolution (Å) 3.13 2.95 3.48 3.77
  FSC threshold 0.143 0.143 0.143 0.143
  Map sharpening B factor (Å2) −113.8 −133.8 −105.8 −144.2
Model composition
  Non-hydrogen atoms 9969 9917 10027 9858
  Protein residues 1251 1301 1251 1237
  Ligand XPG ATP MG SUZ
R.m.s. deviations
  Bond lengths (Å) 0.011 0.011 0.012 0.005
  Bond angles (°) 0.894 0.884 0.889 0.585
Validation
  MolProbity score 2.22 2.111 2.08 2.13
  Clashscore 6 7 5 7
  Rotamer outliers (%) 0.00 0.00 0.00 0.00
Ramachandran plot
  Favored (%) 98 98 98 95
  Allowed (%) 2 2 2 5
  Disallowed (%) 0.00 0.00 0.00 0.00