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. 2023 Apr 7;3(5):100294. doi: 10.1016/j.xgen.2023.100294

Figure 5.

Figure 5

Cohort data reveal MEIs that act as potential enhancers

(A) Summary of MEIs (rows) that support H3K4me1, H3K27ac, and ATAC peaks in the cohort samples (columns). Occupancy is the ratio between samples that support peaks on the MEI (N, red) and those that carry the MEI (N, blue).

(B) Venn diagrams showing MEI peaks that are shared between flu-infected and NI conditions.

(C) Upset plot describing the number of MEIs that support a combination of H3K4me1, H3K27ac, and ATAC peaks, annotated by transposable element class.

(D) The annotated positions of genome-wide peaks and MEI peaks in the genome, with uniformly and randomly sampled genome positions for comparison. Peaks near genes are within 10 Kbp of a gene boundary.