Table 2.
List of candidate genes associated with SNPs from the yield-related mycobiota
| Locusa | SNP | RDA-GWAS | Description | IC4R database* | RiceXPro database** |
|---|---|---|---|---|---|
| LOC_Os01g10320 | Chr1pos5498898.1 | Control | HD-Zip protein | No data | No data |
| LOC_Os01g10350 | Chr1pos5498898.1 | Control | MPPN_protein | No data | No data |
| LOC_Os01g10370 | Chr1pos5498898.1 | Control | AP2 protein | 1 FPKM (root) | 4 (+ ABA leaf); 1 (+ JA leaf); − 2.5 (+ M.oryzae root/leaf) |
| LOC_Os01g10440 | Chr1pos5498898.1 | Control | Xylosyltransferase | FPKM < 1 | 4 (+ ABA root); 4 (+ JA root); 2.5 (+ M.oryzae root); 3.5 (+ M.oryzae leaf) |
| LOC_Os01g10450 | Chr1pos5498898.1 | Control | Kinase | no data | No data |
| LOC_Os01g10470 | Chr1pos5530841.1 | Control | RALFL17 | FPKM < 1 | No significant differences |
| LOC_Os01g10480 | Chr1pos5530841.1 | Control | Plastocyanin | FPKM < 1 | No data |
| LOC_Os01g10490 | Chr1pos5530841.1 | Control | Keratin type I protein | No data | No data |
| LOC_Os01g10504 | Chr1pos5530841.1 | Control | OsMADS3 | No data | No data |
| LOC_Os01g10550 | Chr1pos5530841.1 | Control | Defensin (DEFL) | FPKM < 1 | No data |
| LOC_Os04g06790 | Chr4pos3632808.1 | Drought | Dioxygenase | 14 FPKM (root) | No significant differences |
| LOC_Os04g06860 | Chr4pos3632808.1 | Drought | Peroxidase | No data | No data |
aFor some gene functions there are several loci found. Here only the most highlighted ones are represented
*Showing only expression values for leaf and root tissues. FPKM: Fragments Per Kilobase of transcript per Million mapped reads
**Showing Log2Fold expression values. + M.oryzae: inoculation with Magnaporthe oryzae; + X.oryzae: inoculation with Xanthomonas oryzae; + ABA: abscisic acid treatment; + JA: jasmonic acid treatment