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. 2023 Mar 4;17(6):813–822. doi: 10.1038/s41396-023-01390-4

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© The Author(s) 2023

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 4 — a Sugar uptake and catabolism genes. fucU, L-fucose mutarotase; L-M, lyxose-mannose; fbA, fructose-bisphosphate aldolase; gatZ, tagatose-1,6-bisphosphate aldolase; mtlK, mannitol-2-dehydrogenase; tdh, threonine dehydrogenase. b Polyamine synthesis and uptake genes. speA, arginine carboxylase; speB, agmatinase; speC, ornithine decarboxylase; speE, spermidine synthase; aguA, agmatine deiminase; aguB, N-carbamoylputrescine amidase; spuC, putrescine-pyruvate transaminase; nspC, carboxynorspermidine decarboxylase. c Biotin synthesis and uptake genes. bioA, adenosylmethionine-8-amino-7-oxononanoate aminotransferase. d Chaperone-usher (CU) pilus synthesis genes. SCPU, spore coat U domain-containing protein. e Copper-related operon. copR, transcriptional regulator; copC, copper binding protein; copD, copper resistance protein. Expression levels are shown adjacent to each unique gene in units of transcripts per gene copy; the average expression level across all genes and all sample dates is 0.07 transcripts per gene copy.