Table 2.
Candidate polymorphic DNA markers among chloroplast genomes of 29 tomato germplasms.
| No. | Position* | Polymorphic Type | Variant | Location |
|---|---|---|---|---|
| 1 | 59,407-59,775 | SNP | A/T, G/A, A/G, A/C, G/A | accD |
| 2 | 111,655-113,611 | SNP | G/T, A/G, C/T, G/A, G/A, C/A, C/G, G/A, C/T, C/T, A/G, C/T, A/C, C/A, C/A, G/A | ndhF |
| 3 | 123,639-124,359 | SNP | A/G, C/G, A/C, C/T, C/T, T/C, G/A | ndhH |
| 4 | 84,531-85,109 | SNP | A/G, G/A, A/G, C/T, G/A, C/A | rps3 |
| 5 | 17,372-18,226 | SNP | C/T, G/A, T/C, G/A, A/C | rpoC2 |
| 6 | 24,194-24,416 | SNP | G/T, C/T, C/A | rpoB |
| 7 | 124,633-124,834 | SNP | C/T, G/A, G/A, G/A | rps15 |
| 8 | 120,153-120,479 | SNP | C/A, A/C, T/G | ndhG-ndhI |
| 9 | 51,876-52,585 | SNP | T/A, T/A, G/T, G/T, A/G, C/T, G/T, G/T | ndhK-ndhC-trnV-UAC |
| 10 | 64,959-65,070 | SNP | TA/AC, C/T, A/T, A/G, G/A, TG/AA, A/G, C/T, TT/CA, T/C, C/T, A/T, A/G, T/A, G/A, G/A | petA-psbJ |
| 11 | 16,544-16,547 | MNP | TTTC/AAAA | rps2-rpoC2 |
| 12 | 6330-7031 | SNP/MNP | T/G, AT/GT, T/G, C/A, TTG/AAA | rps16-trnQ-UUG |
| 13 | 58,197-58,228 | SNP/MNP | A/T, T/C, C/T, TAGT/ACTA, A/G, G/A | rbcL-accD |
| 14 | 49,422-49,995 | SNP | C/A, C/A, A/G, G/A | trnF-GAA-ndhJ |
| 15 | 208-437 | SNP | G/A, A/G, T/G, C/A, G/A, G/A | trnH-GUG-psbA |
| 16 | 109,378-109,612 | MNP | CTTT/AAAG, AAA/TTT | trnN-GUU-trnR-ACG |
| 17 | 131,673-131,907 | MNP | TTT/AAA, AAAG/CTTT | trnR-ACG-trnN-GUU |
*Position is based on the alignment file. SNP, single nucleotide polymorphism; MNP, multiple nucleotide polymorphism.