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. 2023 May 22;24:124. doi: 10.1186/s13059-023-02969-y

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© The Author(s) 2023

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

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Fig. 2 — Consensus of structural variation between three pangenomes. a Overlap of SVs between three pangenomes and assembly-based SV discovery. Overall bar height represents the total number of SVs. Variants in different classifications of genomic regions are indicated by colour of the stacked bar. b Number of SVs identified in the input assemblies through assembly-based mapping and the three pangenomes. c Allele count of the SVs (colours described in panel b). d, e Number of and ratio between deletions and insertions recovered from the pangenomes and assembly-based mapping (colours described in panel b)