Table 1.
Genome assembly parameters of A. gallica Jzi34, A. gallica 012m, A. gallica Ar21-2, A. cepistipes B5, A. ostoyae C18/9, A. solidipes 28 − 4, A. mellea DSM 3731, and A. fuscipes CMW2740 [23–25, 32]
| Parameter |
A. gallica
Jzi34 |
A. gallica
012m |
A. gallica
Ar21-2 |
A. cepistipes
B5 |
A. ostoyae
C18/9 |
A. solidipes
28 − 4 |
A. mellea
DSM 3731 |
A. fuscipes
CMW2740 |
|---|---|---|---|---|---|---|---|---|
| Scaffolds | 60 | 63 | 319 | 287 | 106 | 229 | 29,300 | 24,403 |
| Contigs | 68 | 63 | 1866 | 740 | 106 | 848 | 65,823 | 27,509 |
| Maximum length, bp | 8,033,447 | 6,431,929 | 4,779,317 | 6,135,745 | 6,405,655 | 3,399,694 | 639,705 | 157,180 |
| Scaffold size, bp | 79,897,101 | 87,305,441 | 85,336,812 | 75,828,441 | 60,106,801 | 58,009,494 | 79,545,241 | 52,984,320 |
| Contig size, bp | 80,196,756 | 87,305,441 | 78,368,969 | 75,822,108 | 60,106,801 | 55,743,814 | 67,014,010 | 52,475,986 |
| Scaffold N50, bp | 2,535,910 | 2,159,699 | 1,035,263 | 3,291,351 | 2,283,935 | 715,667 | 24,647 | 5,422 |
| Contig N50, bp | 2,534,025 | 2,159,699 | 146,437 | 655,924 | 2,283,935 | 242,961 | 3268 | 4836 |
| GC (%) | 47.44 | 47.38 | 47.35 | 47.71 | 48.33 | 48.35 | 47.26 | 47.68 |
| Gene number (#) | 16,280 | 26,261 | 25,704 | 23,461 | 22,705 | 20,811 | 14,473 | 14,515 |
| Complete BUSCOs | 95.9% | 95.8% | 98.6% | 95.1% | 95.6% | 98.4% | ||
| Duplicated BUSCOs | 1.4% | 4.9% | 3.8% | 2.9% | 2.2% | 3.1% | ||
| Fragmented BUSCOs | 1.4% | 3.3% | 1.0% | 4.0% | 3.7% | 1.3% | ||
| Missing BUSCOs | 2.7% | 0.9% | 0.4% | 0.9% | 0.7% | 0.3% |