TABLE 2.
CFSAN SNP pipeline average differences within clusters and from isolates to the nearest outliera
| Cluster | No. of isolates in cluster | Avg. Pairwise SNPs, within cluster | Std. | Avg. Pairwise SNPs, nearest neighbor | Std. |
|---|---|---|---|---|---|
| 1 | 9 | 7.4 | 5.9 | 102.4 | 1.3 |
| 3 | 14 | 6.6 | 3.6 | 173.5 | 2.4 |
| 4 | 24 | 2.6 | 1.7 | 163.1 | 1.8 |
| 5 | 3 | 3.0 | 0.8 | 88.7 | 1.2 |
| 6 | 2 | 2 | NA | 193.0 | 1.0 |
| Longitudinal | 45 | 3.0 | 2.2 | NA | NA |
a
Cluster 2 had only one isolate from this study and was excluded from this analysis. Longitudinal samples include pairwise comparisons of isolates from the same patient.