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Molecular dynamics simulations of aptamer AP273 binding to AFP. (A) The root means square deviation (RMSD) of the complex of aptamer AP273 and AFP (CPX) in various buffer solutions. (B) The root mean square fluctuation (RMSF) of residues during MD simulations in various buffer solutions. (C) and (D) The RMSDs of CPX, AFP, and AP273 in buffer 6 and buffer 9.
