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. 2023 May 24;14:2995. doi: 10.1038/s41467-023-38785-y

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© The Author(s) 2023

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 3 — Key features of the ExpressAnalyst ‘Expression Profiling’ module include an interactive table of differentially expressed genes (A), with links to EcoOmicsDB ortholog profiles (B). There are six interactive visual analytics tools (C), one of which is the ridgeline plot (D). Here, the ridgeline plot shows gene set enrichment analysis results, where p-values were calculated based on the GSEA algorithm as implemented in the fgsea R package. In violin plots in (A) and (D), orange = time0 and blue = time24.