Table 1.
EcoOmicsDB contains 29 taxonomic sub-groups available for RNA-seq annotation and quantification of non-model organisms in eukaryotes
| Level | Group | Species | Proteins | Ortholog | Seq2Fun (v1) |
|---|---|---|---|---|---|
| 1 | Eukaryotes | 687 | 12,828,537 | 666,067 | 8041 |
| 2 | Animals | 370 | 7,150,735 | 270,089 | - |
| 3 | Vertebrates | 212 | 4,588,985 | 83,704 | 6723 |
| 4 | Mammals | 94 | 1,910,363 | 47,144 | 5883 |
| 4 | Birds | 31 | 482,205 | 22,397 | 4177 |
| 4 | Reptiles | 20 | 384,584 | 21,725 | 4342 |
| 4 | Fishes | 61 | 1,736,572 | 42,497 | 4308 |
| 3 | Arthropods | 119 | 1,727,651 | 113,673 | 3541 |
| 4 | Insects | 101 | 1,376,824 | 70,170 | - |
| 4 | Crustaceans | 7 | 154,960 | 37,407 | - |
| 3 | Cnidarians | 9 | 203,000 | 24,003 | - |
| 3 | Mollusks | 9 | 206,905 | 35,775 | - |
| 3 | Nematodes | 6 | 134,093 | 35,865 | 2324 |
| 2 | Plants | 127 | 3,968,027 | 162,988 | 3012 |
| 3 | Eudicots | 93 | 3,180,221 | 102,677 | - |
| 3 | Monocots | 17 | 560,027 | 43,451 | - |
| 3 | Algae | 14 | 155,495 | 38,334 | - |
| 2 | Fungi | 138 | 1,278,312 | 148,080 | 2423 |
| 3 | Ascomycetes | 100 | 904,642 | 98,151 | - |
| 4 | Eurotiomycetes | 20 | 196,228 | 25,710 | - |
| 4 | Saccharomycetes | 36 | 195,913 | 14,873 | - |
| 4 | Dothideomycetes | 10 | 123,200 | 28,898 | - |
| 3 | Basidiomycetes | 33 | 363,997 | 56,935 | - |
| 2 | Protists | 52 | 660,237 | 134,451 | 2696 |
| 3 | Alveolates | 21 | 207,674 | 51,205 | - |
| 4 | Apicomplexans | 18 | 93,576 | 14,632 | - |
| 3 | Stramenopiles | 8 | 119,746 | 31,581 | - |
| 3 | Amoebozoa | 7 | 81,844 | 22,114 | - |
| 3 | Euglenozoa | 9 | 86,483 | 12,363 | - |
The taxonomic levels are indicated by the number in the Level column and also by indentations and font styles in the Group column (level 1 = bold, level 2 = underline, level 3 = italics, level 4 = regular). The number of orthologs in the KO database used by Seq2Fun version 1.0 are shown in the last column.