Table 2.
Top five DEGs from the salamander case study
| Seq2Fun ID | Symbol | Adj. p-value | log2FC | # Entrez ID | # Species |
|---|---|---|---|---|---|
| s2f_0005954003 | PLEK2 | 4.72E -8 | 4.22 | 222 | 207 |
| s2f_0000105017 | MMP8 | 1.06E −7 | 6.22 | 156 | 143 |
| s2f_0000040013 | TNC | 1.06E −7 | 4.34 | 309 | 218 |
| s2f_0000131002 | LAMB3 | 1.06E −7 | 4.60 | 234 | 211 |
| s2f_0000105021 | MMP12 | 2.25E -7 | 5.99 | 463 | 153 |
The p-value and log2FC statistics are from the ExpressAnalyst differential expression analysis results which uses a moderated t-statistic to calculate a two-sided p-value; the # Entrez ID and # Species are from EcoOmicsDB ortholog profiles.