Table 1.
The primers used for PCR amplification of the tested carbapenemase-encoding genes
Gene | Primer | Primer sequence (5ʹ ◊ 3ʹ) | Expected PCR product size (bp) | Ta (°C) | References |
---|---|---|---|---|---|
bla NDM | Pf | GGTTTGGCGATCTGGTTTTC | 621 | 50 | [41, 42] |
Pr | CGGAATGGCTCATCACGAT | ||||
bla KPC | Pf | TGTCACTGTATCGCCGTC | 1011 | 50 | [40] |
Pr | CTCAGTGCTCTACAGAAAACC | ||||
bla OXA-48 | Pf | GCGTGGTTAAGGATGAACAC | 438 | 50 | [40, 42] |
Pr | CATCAAGTTCAACCCAACCG | ||||
bla VIM | Pf | TCTACATGACCGCGTCTGTC | 748 | 50 | [43] |
Pr | TGTGCTTTGACAACGTTCGC | ||||
bla IMP | Pf | CTACCGCAGCAGAGTCTTTG | 587 | 50 | [44] |
Pr | AACCAGTTTTGCCTTACCAT |
Notes: blaNDM, blaKPC, blaOXA-48,blaVIM, and blaIMP genes code for NDM, KPC, OXA-48-like, VIM, and IMP carbapenemases, respectively. Abbreviations: Ta, annealing temperature; Pf, forward primer; Pr, reverse primer