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. 2023 May 25;23:276. doi: 10.1186/s12870-023-04284-x

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© The Author(s) 2023

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

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Fig. 4 — Population structure of L. japonicus accessions. (A) Geographic distribution of the sampling locations. Different colors represent different subclades. The map plot was generated using ArcGis 10.8. (B) TCS network for all 59 accessions. Missing haplotypes are indicated by black dots and mutational steps are indicated by numbers. (C) PCA of L. japonicus accessions; the proportion of the variance explained was 23.73% for PC1 and 12.74% for PC2. (D) STRUCTURE analysis for K = 3 and 5. Colors indicate different clusters. The x-axis shows the subclades, and the y-axis indicates the probability of inferred ancestral lineages