Table 1.
Strain overview. Shortened three-character name used in figures and tables, full original strain name, serotype, sequence type (ST), number of plasmids in genome assembly and strain metadata
|
Name |
Strain |
Country |
Serotype |
ST |
Clade type |
Isolation source |
Plasmids |
|---|---|---|---|---|---|---|---|
|
C01 |
M101999_C1 |
Spain |
8 |
nt |
Pathogenic |
Non-clinical |
1 |
|
C15 |
SS15055_N2_C15 |
Spain |
2 |
1 |
Pathogenic |
Non-clinical |
0 |
|
D11 |
DNS11 |
Denmark |
9 |
16 |
Pathogenic |
Systemic/brain |
1 |
|
D13 |
DNC13 |
Denmark |
nt |
nt |
Commensal |
Non-clinical |
2 |
|
D15 |
DNC15 |
Denmark |
16 |
nt |
Commensal |
Non-clinical |
0 |
|
D20 |
DNS20 |
Denmark |
nt |
nt |
Commensal |
Systemic/brain |
2 |
|
D43 |
DNR43 |
Denmark |
2 |
28 |
Pathogenic |
Respiratory |
1 |
|
D48 |
DNR48 |
Denmark |
8 |
nt |
Pathogenic |
Respiratory |
1 |
|
D49 |
DNC49 |
Denmark |
2 |
28 |
Pathogenic |
Non-clinical |
0 |
|
G69 |
DE609B |
Germany |
2 |
1 |
Pathogenic |
Systemic/brain |
0 |
|
I12 |
21435_1 |
Spain |
31 |
nt |
Commensal |
Non-clinical |
0 |
|
I27 |
21437_3 |
Spain |
4 |
nt |
Commensal |
Non-clinical |
0 |
|
L42 |
LSS42 |
UK |
16 |
nt |
Pathogenic |
Non-clinical |
0 |
|
P17 |
P1/7 |
UK |
2 |
1 |
Pathogenic |
Systemic/brain |
0 |
|
S10 |
S10 |
Netherlands |
2 |
1 |
Pathogenic |
Systemic/brain |
0 |
|
S11 |
M102942_S11 |
Spain |
9 |
123 |
Pathogenic |
Systemic/brain |
1 |
|
S20 |
M104300_S20 |
Spain |
2 |
1 |
Pathogenic |
Systemic/brain |
0 |
|
S26 |
M105052_S26 |
Spain |
19 |
nt |
Commensal |
Systemic/brain |
0 |
|
S40 |
M106471_S40 1 |
Spain |
30 |
nt |
Commensal |
Systemic/brain |
0 |
|
T15 |
T15 |
Netherlands |
2 |
19 |
Pathogenic |
Non-clinical |
2 |
|
X15 |
1521 251 |
Canada |
7 |
nt |
Pathogenic |
Systemic/brain |
0 |
NT, non-typeable.