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. 2023 May 1;4(5):608–628. doi: 10.1038/s43018-023-00548-5

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© The Author(s) 2023

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Extended Data Fig. 7 — Peptides mapping uniquely to non-canonical and transposable element (TE) sources were analyzed. a, numbers of peptides (n = 992 peptides) from non-canonical and TE sources, shading indicates peptides also found in the HLA-atlas. b, Distribution of identified peptides with respect to gene genomic categories. c, Distribution of HLA alleles per patient that have the best binding prediction for all NC/TE peptides (n = 992 peptides). d, Most important motif for all NC and TE peptides for 3 patients including the percentage of binders and peptide clustering to reveal the binding motifs N is given in the panel.